Review




Structured Review

Biomodels LLC model files biomd0000000005
Comparison of two models describing the cell division cycle. Two SBML encoded models, obtained from BioModels, are compared by different aspects. Both models stem from the same publication describing the cell division cycle . Each box represents an aspect and shows an excerpt of <t>BIOMD0000000005</t> on the left and <t>BIOMD0000000006</t> on the right side.
Model Files Biomd0000000005, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/model+biomd0000000005/pmc05862271-172-6-5?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
model files biomd0000000005 - by Bioz Stars, 2026-07
90/100 stars

Images

1) Product Images from "Notions of similarity for systems biology models"

Article Title: Notions of similarity for systems biology models

Journal: Briefings in Bioinformatics

doi: 10.1093/bib/bbw090

Comparison of two models describing the cell division cycle. Two SBML encoded models, obtained from BioModels, are compared by different aspects. Both models stem from the same publication describing the cell division cycle . Each box represents an aspect and shows an excerpt of BIOMD0000000005 on the left and BIOMD0000000006 on the right side.
Figure Legend Snippet: Comparison of two models describing the cell division cycle. Two SBML encoded models, obtained from BioModels, are compared by different aspects. Both models stem from the same publication describing the cell division cycle . Each box represents an aspect and shows an excerpt of BIOMD0000000005 on the left and BIOMD0000000006 on the right side.

Techniques Used: Comparison

Time courses for BIOMD0000000005 ( A ) and BIOMD0000000006 ( B ). Both time courses (with a duration of 100 s) were generated with COPASI . Model parameters and initial conditions remain as encoded in the SBML-files obtained from BioModels.
Figure Legend Snippet: Time courses for BIOMD0000000005 ( A ) and BIOMD0000000006 ( B ). Both time courses (with a duration of 100 s) were generated with COPASI . Model parameters and initial conditions remain as encoded in the SBML-files obtained from BioModels.

Techniques Used: Generated

Graph edit distance. To transform the network of BIOMD0000000005 into the network of BIOMD0000000006, 28 edit operations had to be performed; 16 edges and 11 nodes are deleted, 1 edge is inserted. Deletions are shown in red, insertions in blue and unchanged elements in grey. The node ∅, representing the empty set, is displayed multiple times for clarity.
Figure Legend Snippet: Graph edit distance. To transform the network of BIOMD0000000005 into the network of BIOMD0000000006, 28 edit operations had to be performed; 16 edges and 11 nodes are deleted, 1 edge is inserted. Deletions are shown in red, insertions in blue and unchanged elements in grey. The node ∅, representing the empty set, is displayed multiple times for clarity.

Techniques Used:



Similar Products

90
Biomodels LLC model files biomd0000000005
Comparison of two models describing the cell division cycle. Two SBML encoded models, obtained from BioModels, are compared by different aspects. Both models stem from the same publication describing the cell division cycle . Each box represents an aspect and shows an excerpt of <t>BIOMD0000000005</t> on the left and <t>BIOMD0000000006</t> on the right side.
Model Files Biomd0000000005, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/model+biomd0000000005/pmc05862271-172-6-5?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
model files biomd0000000005 - by Bioz Stars, 2026-07
90/100 stars
  Buy from Supplier

90
Biomodels LLC model biomd0000000005
Comparison of two models describing the cell division cycle. Two SBML encoded models, obtained from BioModels, are compared by different aspects. Both models stem from the same publication describing the cell division cycle . Each box represents an aspect and shows an excerpt of <t>BIOMD0000000005</t> on the left and BIOMD0000000006 on the right side.
Model Biomd0000000005, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/model+biomd0000000005/pmc05862271-204-3-11?v=Biomodels+LLC
Average 90 stars, based on 1 article reviews
model biomd0000000005 - by Bioz Stars, 2026-07
90/100 stars
  Buy from Supplier

Image Search Results


Comparison of two models describing the cell division cycle. Two SBML encoded models, obtained from BioModels, are compared by different aspects. Both models stem from the same publication describing the cell division cycle . Each box represents an aspect and shows an excerpt of BIOMD0000000005 on the left and BIOMD0000000006 on the right side.

Journal: Briefings in Bioinformatics

Article Title: Notions of similarity for systems biology models

doi: 10.1093/bib/bbw090

Figure Lengend Snippet: Comparison of two models describing the cell division cycle. Two SBML encoded models, obtained from BioModels, are compared by different aspects. Both models stem from the same publication describing the cell division cycle . Each box represents an aspect and shows an excerpt of BIOMD0000000005 on the left and BIOMD0000000006 on the right side.

Article Snippet: The model files, obtained from BioModels (models BIOMD0000000005 and BIOMD0000000006), are encoded in SBML and refer to the organism and biological pathway described.

Techniques: Comparison

Time courses for BIOMD0000000005 ( A ) and BIOMD0000000006 ( B ). Both time courses (with a duration of 100 s) were generated with COPASI . Model parameters and initial conditions remain as encoded in the SBML-files obtained from BioModels.

Journal: Briefings in Bioinformatics

Article Title: Notions of similarity for systems biology models

doi: 10.1093/bib/bbw090

Figure Lengend Snippet: Time courses for BIOMD0000000005 ( A ) and BIOMD0000000006 ( B ). Both time courses (with a duration of 100 s) were generated with COPASI . Model parameters and initial conditions remain as encoded in the SBML-files obtained from BioModels.

Article Snippet: The model files, obtained from BioModels (models BIOMD0000000005 and BIOMD0000000006), are encoded in SBML and refer to the organism and biological pathway described.

Techniques: Generated

Graph edit distance. To transform the network of BIOMD0000000005 into the network of BIOMD0000000006, 28 edit operations had to be performed; 16 edges and 11 nodes are deleted, 1 edge is inserted. Deletions are shown in red, insertions in blue and unchanged elements in grey. The node ∅, representing the empty set, is displayed multiple times for clarity.

Journal: Briefings in Bioinformatics

Article Title: Notions of similarity for systems biology models

doi: 10.1093/bib/bbw090

Figure Lengend Snippet: Graph edit distance. To transform the network of BIOMD0000000005 into the network of BIOMD0000000006, 28 edit operations had to be performed; 16 edges and 11 nodes are deleted, 1 edge is inserted. Deletions are shown in red, insertions in blue and unchanged elements in grey. The node ∅, representing the empty set, is displayed multiple times for clarity.

Article Snippet: The model files, obtained from BioModels (models BIOMD0000000005 and BIOMD0000000006), are encoded in SBML and refer to the organism and biological pathway described.

Techniques:

Comparison of two models describing the cell division cycle. Two SBML encoded models, obtained from BioModels, are compared by different aspects. Both models stem from the same publication describing the cell division cycle . Each box represents an aspect and shows an excerpt of BIOMD0000000005 on the left and BIOMD0000000006 on the right side.

Journal: Briefings in Bioinformatics

Article Title: Notions of similarity for systems biology models

doi: 10.1093/bib/bbw090

Figure Lengend Snippet: Comparison of two models describing the cell division cycle. Two SBML encoded models, obtained from BioModels, are compared by different aspects. Both models stem from the same publication describing the cell division cycle . Each box represents an aspect and shows an excerpt of BIOMD0000000005 on the left and BIOMD0000000006 on the right side.

Article Snippet: Using the original model BIOMD0000000005 as a query, we can screen BioModels for similar models by using the semanticSBML tool.

Techniques: Comparison

Time courses for BIOMD0000000005 ( A ) and BIOMD0000000006 ( B ). Both time courses (with a duration of 100 s) were generated with COPASI . Model parameters and initial conditions remain as encoded in the SBML-files obtained from BioModels.

Journal: Briefings in Bioinformatics

Article Title: Notions of similarity for systems biology models

doi: 10.1093/bib/bbw090

Figure Lengend Snippet: Time courses for BIOMD0000000005 ( A ) and BIOMD0000000006 ( B ). Both time courses (with a duration of 100 s) were generated with COPASI . Model parameters and initial conditions remain as encoded in the SBML-files obtained from BioModels.

Article Snippet: Using the original model BIOMD0000000005 as a query, we can screen BioModels for similar models by using the semanticSBML tool.

Techniques: Generated

Graph edit distance. To transform the network of BIOMD0000000005 into the network of BIOMD0000000006, 28 edit operations had to be performed; 16 edges and 11 nodes are deleted, 1 edge is inserted. Deletions are shown in red, insertions in blue and unchanged elements in grey. The node ∅, representing the empty set, is displayed multiple times for clarity.

Journal: Briefings in Bioinformatics

Article Title: Notions of similarity for systems biology models

doi: 10.1093/bib/bbw090

Figure Lengend Snippet: Graph edit distance. To transform the network of BIOMD0000000005 into the network of BIOMD0000000006, 28 edit operations had to be performed; 16 edges and 11 nodes are deleted, 1 edge is inserted. Deletions are shown in red, insertions in blue and unchanged elements in grey. The node ∅, representing the empty set, is displayed multiple times for clarity.

Article Snippet: Using the original model BIOMD0000000005 as a query, we can screen BioModels for similar models by using the semanticSBML tool.

Techniques: